Cytoscape ESP: simple search of complex biological networks
نویسندگان
چکیده
SUMMARY Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks. Availabiity: http://chianti.ucsd.edu/cyto_web/plugins/ CONTACT [email protected].
منابع مشابه
Biological network exploration with Cytoscape 3.
Cytoscape is one of the most popular open-source software tools for the visual exploration of biomedical networks composed of protein, gene, and other types of interactions. It offers researchers a versatile and interactive visualization interface for exploring complex biological interconnections supported by diverse annotation and experimental data, thereby facilitating research tasks such as ...
متن کاملiCTNet2: integrating heterogeneous biological interactions to understand complex traits
iCTNet (integrated Complex Traits Networks) version 2 is a Cytoscape app and database that allows researchers to build heterogeneous networks by integrating a variety of biological interactions, thus offering a systems-level view of human complex traits. iCTNet2 is built from a variety of large-scale biological datasets, collected from public repositories to facilitate the building, visualizati...
متن کاملExploratory Analysis of Biological Networks through Visualization, Clustering, and Functional Annotation in Cytoscape.
Biological networks define how genes, proteins, and other cellular components interact with one another to carry out specific functions, providing a scaffold for understanding cellular organization. Although in-depth network analysis requires advanced mathematical and computational knowledge, a preliminary visual exploration of biological networks is accessible to anyone with basic computer ski...
متن کاملComputing topological parameters of biological networks
UNLABELLED Rapidly increasing amounts of molecular interaction data are being produced by various experimental techniques and computational prediction methods. In order to gain insight into the organization and structure of the resultant large complex networks formed by the interacting molecules, we have developed the versatile Cytoscape plugin NetworkAnalyzer. It computes and displays a compre...
متن کاملDevelopment of an integrated network visualisation and graph analysis tool for biological networks
There has been a steady increase in the amount of molecular data generated by experiments and computational methods performed on biological networks. There is a growing need to obtain an insight into the organisation and structure of the massive and complex biological networks formed by the interacting molecules. To that end, this paper presents a newly developed plugin for integrated network v...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Bioinformatics
دوره 24 شماره
صفحات -
تاریخ انتشار 2008